=> Bootstrap dependency digest>=20010302: found digest-20190127 WARNING: [license.mk] Every package should define a LICENSE. => Checksum SHA1 OK for mpich-3.2.1.tar.gz => Checksum RMD160 OK for mpich-3.2.1.tar.gz => Checksum SHA512 OK for mpich-3.2.1.tar.gz ===> Installing dependencies for mpich-3.2.1nb4 ========================================================================== The supported build options for mpich are: debug f90 You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.mpich (not defined) ========================================================================== => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6nb2 => Tool dependency bsdtar-[0-9]*: found bsdtar-3.4.3 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency x11-links>=1.32: found x11-links-1.32 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency bash-[0-9]*: found bash-5.1.4 => Full dependency perl>=5.0: found perl-5.32.1 => Full dependency hwloc>=1.11.13nb2: found hwloc-1.11.13nb2 => Full dependency openpa>=1.0.1: found openpa-1.0.4 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. ===> Overriding tools for mpich-3.2.1nb4 ===> Extracting for mpich-3.2.1nb4 ===> Patching for mpich-3.2.1nb4 => Applying pkgsrc patches for mpich-3.2.1nb4 => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-Makefile.in,v 1.4 2018/11/04 11:49:40 bsiegert Exp $ | |Do not create libopa symlink; it conflicts with parallel/openpa/PLIST. | |--- Makefile.in.orig 2015-11-12 04:08:10.000000000 +0000 |+++ Makefile.in -------------------------- Patching file Makefile.in using Plan A... Hunk #1 succeeded at 39730 (offset -54 lines). done => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-configure => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure,v 1.2 2017/04/29 18:18:52 adam Exp $ | |Portability fix. |Make it use weak symbols with Clang. | |--- configure.orig 2015-11-12 04:08:11.000000000 +0000 |+++ configure -------------------------- Patching file configure using Plan A... Hunk #1 succeeded at 26875 (offset 438 lines). Hunk #2 succeeded at 28963 (offset -359 lines). done => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpi_romio_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpi_romio_configure,v 1.1 2017/04/29 18:18:52 adam Exp $ | |Portability fix. | |--- src/mpi/romio/configure.orig 2017-04-28 20:33:04.000000000 +0000 |+++ src/mpi/romio/configure -------------------------- Patching file src/mpi/romio/configure using Plan A... Hunk #1 succeeded at 22991 (offset 62 lines). done => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_include_mpidi_ch3_impl.h,v 1.2 2017/04/29 18:18:52 adam Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h.orig 2015-11-10 02:39:01.000000000 +0000 |+++ src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h -------------------------- Patching file src/mpid/ch3/channels/nemesis/include/mpidi_ch3_impl.h using Plan A... Hunk #1 succeeded at 106. Hunk #2 succeeded at 125. done => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_mpid_ch3_channels_nemesis_src_ch3__init.c,v 1.1 2017/04/29 18:18:52 adam Exp $ | |Use pthread_mutexattr_setpshared() only when available. | |--- src/mpid/ch3/channels/nemesis/src/ch3_init.c.orig 2017-04-29 16:30:18.534262462 +0000 |+++ src/mpid/ch3/channels/nemesis/src/ch3_init.c -------------------------- Patching file src/mpid/ch3/channels/nemesis/src/ch3_init.c using Plan A... Hunk #1 succeeded at 52. Hunk #2 succeeded at 64. done => Verifying /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure => Applying pkgsrc patch /tree/pkgsrc/parallel/mpi-ch/patches/patch-src_pm_hydra_configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_pm_hydra_configure,v 1.3 2017/04/29 18:18:52 adam Exp $ | |Last newline is not needed. | |--- src/pm/hydra/configure.orig 2012-12-20 21:28:12.000000000 +0100 |+++ src/pm/hydra/configure 2013-01-24 15:36:08.260189221 +0100 -------------------------- Patching file src/pm/hydra/configure using Plan A... Hunk #1 succeeded at 14604 (offset 231 lines). done ===> Creating toolchain wrappers for mpich-3.2.1nb4 ===> Configuring for mpich-3.2.1nb4 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files configure: WARNING: unrecognized options: --with-hwloc-prefix Configuring MPICH version 3.2.1 with '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--prefix=/usr/pkg' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'FC=g77' 'F77=g77' 'FFLAGS=-O' Running on system: NetBSD armbulk2 8.0 NetBSD 8.0 (LIBKVER) #0: Tue Jan 19 00:00:00 UTC 2038 root@localhost:/sys/arch/evbarm/compile/LIBKVER evbarm checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for armv7--netbsdelf-eabihf-ar... no checking for armv7--netbsdelf-eabihf-lib... no checking for armv7--netbsdelf-eabihf-link... no checking for ar... ar checking the archiver (ar) interface... ar checking build system type... armv7--netbsdelf-eabihf checking host system type... armv7--netbsdelf-eabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv7--netbsdelf-eabihf file names to armv7--netbsdelf-eabihf format... func_convert_file_noop checking how to convert armv7--netbsdelf-eabihf file names to toolchain format... func_convert_file_noop checking for /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for armv7--netbsdelf-eabihf-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for armv7--netbsdelf-eabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7--netbsdelf-eabihf-ar... ar checking for archiver @FILE support... @ checking for armv7--netbsdelf-eabihf-strip... no checking for strip... strip checking for armv7--netbsdelf-eabihf-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for armv7--netbsdelf-eabihf-mt... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking whether the c++ linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... rm: conftest*: No such file or directory yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran compiler... no checking whether g77 accepts -g... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes libtool.m4: error: problem compiling FC test program checking for g77 option to produce PIC... checking if g77 static flag works... no checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory no checking if g77 supports -c -o file.o... (cached) no checking whether the g77 linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. yes checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran 77 compiler... no checking whether g77 accepts -g... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g77 option to produce PIC... checking if g77 static flag works... no checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory no checking if g77 supports -c -o file.o... (cached) no checking whether the g77 linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. yes checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate configure: RUNNING PREREQ FOR ch3:nemesis checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' --disable-versioning '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include ' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include ' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include ' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... confdb/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking build system type... armv7--netbsdelf-eabihf checking host system type... armv7--netbsdelf-eabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv7--netbsdelf-eabihf file names to armv7--netbsdelf-eabihf format... func_convert_file_noop checking how to convert armv7--netbsdelf-eabihf file names to toolchain format... func_convert_file_noop checking for /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for armv7--netbsdelf-eabihf-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for armv7--netbsdelf-eabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7--netbsdelf-eabihf-ar... (cached) ar checking for archiver @FILE support... @ checking for armv7--netbsdelf-eabihf-strip... no checking for strip... strip checking for armv7--netbsdelf-eabihf-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for armv7--netbsdelf-eabihf-mt... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs sourcing /scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether TRUE has been defined... no checking whether the C++ compiler c++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether <iostream> available... yes checking whether the compiler implements the namespace std... yes checking whether <math> available... no checking for GNU g++ version... 5 . 5 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/pkg/bin/perl checking for ar... (cached) ar checking for ranlib... ranlib checking for killall... no checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /usr/pkg/bin/bash checking whether /usr/pkg/bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 4 checking size of unsigned long... 4 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 8 checking size of void *... 4 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 8 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 16 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 16 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 16 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... no checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes checking size of MPIR_Bsend_data_t... 56 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... no checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... no checking for sched_getaffinity... no checking for bindprocessor... no checking for thread_policy_set... no checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:nemesis checking for net/if.h... yes checking for assert.h... (cached) yes checking for netdb.h... (cached) yes checking for unistd.h... (cached) yes checking for sched.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... (cached) yes checking sys/sockio.h usability... yes checking sys/sockio.h presence... yes checking for sys/sockio.h... yes checking for sys/types.h... (cached) yes checking for errno.h... (cached) yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking for netinet/in.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for signal... yes checking for mkstemp... (cached) yes checking for rand... yes checking for srand... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking whether struct hostent contains h_addr_list... (cached) yes checking whether we can use struct ifconf... yes checking whether we can use struct ifreq... yes checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no configure: RUNNING CONFIGURE FOR src/pm/gforker checking for library containing socketpair... none required checking for sys/types.h... (cached) yes checking for signal.h... (cached) yes checking sys/ptrace.h usability... yes checking sys/ptrace.h presence... yes checking for sys/ptrace.h... yes checking for strsignal... yes checking for sigaction... yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction... yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking wait.h usability... no checking wait.h presence... no checking for wait.h... no checking for errno.h... (cached) yes configure: RUNNING CONFIGURE FOR src/pm/util checking for pid_t... (cached) yes checking for setsid... yes checking for isatty... yes checking for getsid... yes checking whether getsid needs a declaration... no checking for unsetenv... yes checking for cygwin1.dll in /bin... yes checking for environ in unistd.h... no checking for extern environ in runtime... yes checking for library containing socketpair... (cached) none required checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for signal.h... (cached) yes checking for sys/ptrace.h... (cached) yes checking for sys/uio.h... (cached) yes checking for unistd.h... (cached) yes checking whether struct iovec is defined in sys/uio.h... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for snprintf... (cached) yes checking for strdup... (cached) yes checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... (cached) yes checking for struct sigaction and sa_handler... yes checking whether snprintf needs a declaration... (cached) no checking whether strdup needs a declaration... (cached) no checking for putenv... (cached) yes checking whether putenv needs a declaration... (cached) no checking for gethostname... (cached) yes checking whether gethostname needs a declaration... (cached) no checking for select... (cached) yes checking for sys/select.h... (cached) yes checking whether FD_ZERO works... yes checking for sched_setaffinity... (cached) no checking for sched_getaffinity... (cached) no checking for bindprocessor... (cached) no checking for thread_policy_set... (cached) no checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for time.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for wait.h... (cached) no checking for errno.h... (cached) yes checking for time... (cached) yes checking whether socklen_t is defined (in sys/socket.h if present)... (cached) yes configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpi/romio/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by make... GNU checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking build system type... armv7--netbsdelf-eabihf checking host system type... armv7--netbsdelf-eabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv7--netbsdelf-eabihf file names to armv7--netbsdelf-eabihf format... func_convert_file_noop checking how to convert armv7--netbsdelf-eabihf file names to toolchain format... func_convert_file_noop checking for /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for armv7--netbsdelf-eabihf-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for armv7--netbsdelf-eabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7--netbsdelf-eabihf-ar... (cached) ar checking for archiver @FILE support... @ checking for armv7--netbsdelf-eabihf-strip... no checking for strip... strip checking for armv7--netbsdelf-eabihf-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for armv7--netbsdelf-eabihf-mt... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... netbsd ROMIO home directory is /scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpi/romio checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran 77 compiler... no checking whether g77 accepts -g... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g77 option to produce PIC... checking if g77 static flag works... no checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory no checking if g77 supports -c -o file.o... (cached) no checking whether the g77 linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. yes checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran compiler... no checking whether g77 accepts -g... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes libtool.m4: error: problem compiling FC test program checking for g77 option to produce PIC... checking if g77 static flag works... no checking if g77 supports -c -o file.o... rm: conftest*: No such file or directory no checking if g77 supports -c -o file.o... (cached) no checking whether the g77 linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. yes checking dynamic linker characteristics... PKGSRC-WARNING: Something is trying to run the fortran compiler, PKGSRC-WARNING: but it is not added to USE_LANGUAGES in the package Makefile. NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... no checking Fortran external names configure: WARNING: Unable to test Fortran compiler. Compiling a test program failed to produce an object file checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for mpix.h... no checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 4 checking for int large enough for pointers... yes checking size of long long... (cached) 8 Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... yes checking sys/aio.h presence... yes checking for sys/aio.h... yes checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... no checking sys/vfs.h presence... no checking for sys/vfs.h... no checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... no checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) no checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... no checking for usleep... yes checking whether usleep needs a declaration... no setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to : setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing default-1 commands configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=-lpthread ' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpi/romio/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking build system type... armv7--netbsdelf-eabihf checking host system type... armv7--netbsdelf-eabihf checking target system type... armv7--netbsdelf-eabihf checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /usr/bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking whether make supports nested variables... (cached) yes checking for perl... /usr/pkg/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 4 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv7--netbsdelf-eabihf file names to armv7--netbsdelf-eabihf format... func_convert_file_noop checking how to convert armv7--netbsdelf-eabihf file names to toolchain format... func_convert_file_noop checking for /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for armv7--netbsdelf-eabihf-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for armv7--netbsdelf-eabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7--netbsdelf-eabihf-ar... (cached) ar checking for archiver @FILE support... @ checking for armv7--netbsdelf-eabihf-strip... no checking for strip... strip checking for armv7--netbsdelf-eabihf-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for armv7--netbsdelf-eabihf-mt... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes configure: ===== configuring mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' --disable-versioning '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2 ' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpl/include -I/usr/pkg/include -D_REENTRANT -I/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/src/mpi/romio/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include -O2' 'FC=g77' 'F77=g77' 'FFLAGS=-O ' 'MPLLIBNAME=mpl' 'PKG_CONFIG=' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking build system type... armv7--netbsdelf-eabihf checking host system type... armv7--netbsdelf-eabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld checking if the linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert armv7--netbsdelf-eabihf file names to armv7--netbsdelf-eabihf format... func_convert_file_noop checking how to convert armv7--netbsdelf-eabihf file names to toolchain format... func_convert_file_noop checking for /scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld option to reload object files... -r checking for armv7--netbsdelf-eabihf-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for armv7--netbsdelf-eabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for armv7--netbsdelf-eabihf-ar... (cached) ar checking for archiver @FILE support... @ checking for armv7--netbsdelf-eabihf-strip... no checking for strip... strip checking for armv7--netbsdelf-eabihf-ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for armv7--netbsdelf-eabihf-mt... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/scratch/work/parallel/mpi-ch/work/.cwrapper/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... yes checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... no checking for manually declared extern environ... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking hwloc.h usability... yes checking hwloc.h presence... yes checking for hwloc.h... yes checking for hwloc_topology_set_pid in -lhwloc... yes checking if non-embedded hwloc works... yes checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory configure: WARNING: unrecognized options: --with-openpa-prefix, --with-pm, --with-thread-package, --enable-wrapper-rpath, --enable-fortran configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 4 configure: WARNING: Could not define Fortran MPI datatypes for C checking the sizeof MPI_Offset... 8 checking for size of MPI_Status... 20 configure: WARNING: The ch3 device did not set the maximum size of an error string, 512 being used. configure: creating ./config.lt config.lt: creating libtool rm: libtoolT: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/timers/mpiu_timer.h config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/scratch/work/parallel/mpi-ch/work/mpich-3.2.1/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/pkg' '--datadir=/usr/pkg/share/mpich' '--docdir=/usr/pkg/share/doc/mpich' '--htmldir=/usr/pkg/share/doc/mpich/html' '--sysconfdir=/usr/pkg/etc/mpich' '--with-hwloc-prefix=/usr/pkg' '--with-openpa-prefix=/usr/pkg' '--with-pm=hydra:gforker' '--with-thread-package=posix' '--enable-wrapper-rpath' '--enable-fortran=no' '--x-includes=/usr/X11R7/include' '--x-libraries=/usr/X11R7/lib' '--build=armv7--netbsdelf-eabihf' '--host=armv7--netbsdelf-eabihf' '--mandir=/usr/pkg/man' '--enable-option-checking=yes' 'build_alias=armv7--netbsdelf-eabihf' 'host_alias=armv7--netbsdelf-eabihf' 'CC=gcc' 'CFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'LDFLAGS=-lm -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/lib -Wl,-R/usr/lib' 'LIBS=' 'CPPFLAGS=-I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'CXX=c++' 'CXXFLAGS=-O2 -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/X11R7/include -I/usr/include' 'FC=g77' 'F77=g77' 'FFLAGS=-O' --cache-file=/dev/null --srcdir=. configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-thread-package, --enable-wrapper-rpath RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether make supports nested variables... (cached) yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by make... GNU checking for armv7--netbsdelf-eabihf-icc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for armv7--netbsdelf-eabihf-ranlib... ranlib checking for armv7--netbsdelf-eabihf-ar... ar checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 4 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... no checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran 77 compiler... no checking whether g77 accepts -g... no configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset configure: WARNING: Selecting integer as the Fortran type for MPI_Aint checking for armv7--netbsdelf-eabihf-ifort... g77 checking whether we are using the GNU Fortran compiler... no checking whether g77 accepts -g... no checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking whether <iostream> available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 4 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... int checking for perl... /usr/pkg/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands configure: WARNING: unrecognized options: --with-hwloc-prefix, --with-openpa-prefix, --with-thread-package, --enable-wrapper-rpath configure: WARNING: unrecognized options: --with-hwloc-prefix Configuration completed. => Modifying libtool scripts to use pkgsrc libtool => Modifying libtool scripts to use pkgsrc depcomp WARNING: *** Please consider adding fortran to USE_LANGUAGES in the package Makefile.